QSAR ANALYSIS USING SEMI-EMPIRICAL AM1 METHOD, MOLECULAR DOCKING, AND ADMET STUDIES OF CHALCONE DERIVATIVES AS ANTIMALARIAL COMPOUNDS
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Malaria is a serious caused by protozoan parasites such as Plasmodium groups and has fatal consequences for human health. The increase in the resistance of the Plasmodium parasites toward existing antimalarial drugs prompts the exploration of novel compounds. In this study, quantitative structure-activity relationship (QSAR) analysis using the semi-empirical AM1 method was conducted to identify the optimal model that relates physicochemical properties and biological activity of chalcone derivatives. In addition, ADMET prediction and molecular docking were also carried out. Multilinear regression calculations for statistical parameters of QSAR models revealed that Model 4, with 11 independent variables, provided the best predictions and exhibited a robust correlation with antimalarial activity represented by inhibitory concentration (IC50). ADMET predictions indicated favorable absorption, distribution, metabolism, excretion, and toxicity properties, particularly for B2D, showing promising antimalarial attributes. Molecular docking studies targeting 5 mutated PfDHODH proteins revealed B2D's potential to reach therapeutic targets efficiently. It has low docking scores for mutations I (-10.5 kcal/mol), II (-8.6 kcal/mol), and V (-10.5 kcal/mol) with RMSD < 2í…, in carrying out its role for antimalarial activity. This research successfully identifies B2D as an efficient inhibitor of PfDHODH receptors. Thus, it is a highly promising novel antimalarial drug.
Al Azzam, K. M., Negim, E.-S., & Aboul-Enein, H. Y., 2022. ADME Studies of TUG-770 (A GPR-40 Inhibitor Agonist) For The Treatment of Type 2 Diabetes Using SwissADME Predictor: In Silico Study. Journal of Applied Pharmaceutical Science, 12(4), 159-169.
Anggraeni, V. J., Purwaniati, P., Budiana, W., & Nurdin, T., 2022. Molecular Docking Compounds in Methanol Extract of Mango Leaves (Mangifera indica L.) as Anti-Inflammatory Agent. Jurnal Kimia Riset, 7(1), 57-65.
Arba, M., Ardiansyah, R., & Leonita, M., 2016. Studi Hubungan Kuantitatif Struktur-Aktivitas Senyawa Turunan Meisoindigo Sebagai Inhibitor CDK4. Journal Kimia Riset, 1(2), 129-134.
Carvalho, S. A., Feitosa, L. O., Soares, M., Costa, T. E., Henriques, M. G., Salomí£o, K., Fraga, C. A., 2012. Design and Synthesis of New (E)-Cinnamic N-Acylhydrazones as Potent Antitrypanosomal Agents. European Journal of Medicinal Chemistry, 54, 512-521.
Deviana, K. Z., & Diniatik., 2021. Analisis Penambatan Molekuler dan Prediksi Toksisitas dan ADME Penghambat Enzim Dipeptidil Peptidase IV dari Senyawa Aktif Momordica charantia L. sebagai Antidiabeter. PHARMACY: Jurnal Farmasi Indonesia, 18(2), 361-370.
Evita, I. D., Banon, C., Yudha S., S., & Adfa, M., 2022. Optimasi Hubungan Kuantitatif Struktur Senyawa Turunan Quercetin Yang Berpotensi Terhadap Aktivitas Antivirus Dengue dengan Metode Austin Model 1. Chimica et Natura Acta, 10(2), 53-59.
Fang, W.-Y., Ravindar, L., Rakesh, K., Manukumar, H., Shantharam, C., Alharbi, N. S., & Qin, H.-L., 2019. Synthetic approaches and pharmaceutical applications of chloro-containing molecules for drug discovery: A critical review. European Journal of Medicinal Chemistry, 173, 117-153.
Greef, J., Joubert, J., Malan, S. F., & Dyk, S. v., 2012. Antioxidant Properties of 4-Quinolones and Structurally Related Flavones. Bioorganic & Medicinal Chemistry, 20, 809-818.
Hadanu, R., Idris, S., & Sutapa, I. W., 2015. QSAR Analysis of Benzothiazole Derivatives of Antimalarial Compounds Based on AM1 Semi-Empirical Method. Indonesian Journal of Chemistry, 15(1), 86-92.
Hadni, H., & Elhallaoui, M., 2019. Molecular Docking and QSAR Studies For Modeling The Antimalarial Activity of Hybrids 4-Anilinoquinoline-triazines Derivatives With The Wild-Type and Mutant Receptor pf-DHFR. Heliyon, 5, 1-8.
Hadni, H., & Elhallaoui, M., 2020. 3D-QSAR, Docking and ADMET Properties of Aurone Analogues As Antimalarial Agents. Heliyon, 6, 1-11.
Ibrahim, Z. Y., Uzairu, A., Shallangwa, G., & Abechi, S., 2020. Theoretical design of novel antimalarial agents against P. falciparum strain, Dd2 through the QSAR modeling of synthesized 2'-substituted triclosan derivatives. Heliyon, 6, 1-11.
Iwaloye, O., Elekofehinti, O. O., Kikiowo, B., Fadipe, T. M., Akinjiyan, M. O., Ariyo, E. O., Adewumi, N. A., 2021. Discovery of Traditional Chinese Medicine Derived Compounds as Wild Type and Mutant Plasmodium falciparum Dihydrofolate Reductase Inhibitors: Induced Fit Docking and ADME Studies. Current Drug Discovery Technologies, 18(4), 554-569.
Komari, N., Adawiyah, R., & Suhartono, E., 2022. Evaluasi Molecular Docking Senyawa Mangiferin Dari Buah Kasturi (Mangifera casturi) Sebagai Antikanker Payudara. Prosiding Seminar Nasional Lingkungan Lahan Basah, 7(1), 8-14.
Liu, Z., Tang, L., Zou, P., Zhang, Y., Wang, Z., Fang, Q., Liang, G., 2014. Synthesis and Biological Evaluation of Allylated and Prenylated Mono-Carbonyl Analogs of Curcumin as Anti-Inflammatory Agents. European Journal of Medicinal Chemistry, 74, 671-682.
Muliadi, Setiawan, T., Setiani, I. D., Limatahu, N. A., & Liestianty, D., 2023. Computational Chemistry: QSAR of Dental Disease Causing Streptococcus mutans Using Eugenol Derivative Compounds from Clove Essential Oil. TECHNO: Jurnal Penelitian, 39-45.
Muratov, E. N., Bajorath, J., Sheridan, R. P., Tetko, I. v., Filimonov, D., Poroikov, V., Tropsha, A., 2020. QSAR Without Borders. Chemical Society Reviews, 49, 3525-3564.
Nasir, M., & Marwati, E., 2022. Uji Aktivitas Antimikroba Ekstrak Etanol Daging Buah dan Daun Pala (Myristica fragrans). Jurnal Sains dan Kesehatan, 4(1), 67-76.
Nusantoro, Y., & Fadlan, A., 2020. Analisis Sifat Mirip Obat, Prediksi ADMET dan Penambatan Molekuler Isatinil-2-Aminobenzoilhidrazon dan Kompleks Logam Transisi Co(II), Ni(II), Cu(II), Zn(II) Terhadap BCL2-XL. Akta Kimia Indonesia, 5(2), 114-126.
Oh, K. Y., Lee, J. H., Curtis-Long, M. J., Cho, J. K., Kim, J. Y., Lee, W. S., & Park, K. H., 2010. Glycosidase inhibitory phenolic compounds from the seed of Psoralea corylifolia. Food Chemistry, 121, 940-945.
Permana, A., Aulia, S. D., Azizah, N. N., Ruhdiana, T., Suci, S. E., Izzah, I. N., Wahyudi, S. A., 2022. Artikel Review : Fitokimia Dan Farmakologi Tumbuhan Kitolod (Isotoma longiflora Presi). Jurnal Buana Farma, 2(3), 22-35.
Pingaew, R., Prachayasittikul, V., Worachartcheewan, A., Thongnum, A., Prachayasittikul, S., Ruchirawat, S., & Prachayasittikul, V., 2022. Anticancer Activity and QSAR Study of Sulfur-Containing Thiourea and Sulfonamide Derivatives. Heliyon, 8, 1-10.
Pratama, A. B., Herowati, R., & Ansory, H. M., 2021. Studi Docking Molekuler Senyawa Dalam Minyak Atsiri Pala (Myristica fragrans H.) Dan Senyawa Turunan Miristisin Terhadap Target Terapi Kanker Kulit. Majalah Farmaseutik, 17(2), 233-242.
Qin, H.-L., Zhang, Z.-W., Lekkala, R., Alsulami, H., & Rakesh, K., 2020. Chalcone hybrids as privileged scaffolds in antimalarial drug discovery: A key review. European Journal of Medicinal Chemistry, 193, 1-17.
Sashidhara, K. V., Avula, S. R., Mishra, V., Palnati, G. R., Singh, L. R., Singh, N., Palit, G., 2015. Identification of Quinoline-Chalcone Hybrids as Potential Antiulcer Agents. European Journal of Medicinal Chemistry, 89, 638-653.
Sharma, H., Patil, S., Sanchez, T. W., Neamati, N., Schinazi, R. F., & Buolamwini, J. K., 2011. Synthesis, biological evaluation and 3D-QSAR studies of 3-keto salicylic acid chalcones and related amides as novel HIV-1 integrase inhibitors. Bioorganic & Medicinal Chemistry, 19, 2030-2045.
Silva, K. d., Bortoleti, B. d., Oliveira, L. d., Maia, F. d., Castro, J. C., Costa, I. C., Goncalves, R. S., 2022. Antileishmanial Activity of 4,8-Dimethoxynaphthalenyl Chalcones on Leishmania amazonensis. Journal Antibiotics, 11(10), 1-23.
Utomo, S. B., Sanubari, F., Utami, B., & Nurhayati, N. D., 2017. Analisis Hubungan Kuantitatif Struktur dan Aktivitas Analgesik Senyawa Turunan Meperidin Menggunakan Metode Semiepiris AM1. Jurnal Kimia dan Pendidikan Kimia, 2(3), 158-168.
Wang, Y., Curtis-Long, M. J., Lee, B. W., Yuk, H. J., Kim, D. W., Tan, X. F., & Park, K. H., 2014. Inhibition of Tyrosinase Activity by Polyphenol Compounds From Flemingia philippinensis roots. Bioorganic & Medicinal Chemistry, 22, 1115-1120.
Waskitha, S. S., Mulyana, F. E., Riza, N. F., Stansyah, Y. M., Tahir, I., & Wahyuningsih, T. D., 2021. QSAR Approach and Synthesis of Chalcone Derivatives as Antimalaria Compound Against Plasmodium Falciparum 3D7 Strain. Rasaya J. Chem, 14(4), 2363-2370.
WHO., 2021. World Malaria Report 2021. Angewandte Chemie International Edition, 6(11), 951-952.
Wilhelm, A., Kendrekar, P., Noreljaleel, A. E., Abay, E. T., Bonnet, S. L., Wiesner, L., Westhuizen, J. v., 2015. Syntheses and in Vitro Antiplasmodial Activity of Aminoalkylated Chalcones and Analogues. Journal of Natural Products, 78(8), 1848-1858.
Xu, M., Wu, P., Shen, F., Ji, J., & Rakesh, K., 2019. Chalcone derivatives and their antibacterial activities: Current development. Bioorganic Chemistry, 91, 1-17.
Zain, D. N., Amin, S., & Indra., 2020. Hubungan Kuantitatif Struktur-Aktivitsa Fungisida Turunan 1,2,4-Thiadiazolin Menggunakan Metode Austin Model 1 (AM1). Journal od Pharmacopolium, 3(3), 174-182.
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