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The Analysis of Morphological and Genetic Characteristics of Yellowstripe Scad from Muara Baru Modern Fish Market in North Jakarta
Corresponding Author(s) : Rahmat Sawalman
Jurnal Ilmiah Perikanan dan Kelautan, Vol. 12 No. 2 (2020): JURNAL ILMIAH PERIKANAN DAN KELAUTAN
Abstract
- Identification and morphological analysis of Selaroides leptolepis fish.
- Molecular analysis using the DNA Barcoding method with the COI gene (mitochondrial cytochrome oxidase subunit I).
- The number of base pairs in S. leptolepis from the sequencing results was 675bp.
- The morphological and molecular similarities of Selaroides leptolepis fish
Abstract
Yellowstripe scad is one of the commercially important fish from the Carangidae family, which is marketed at Muara Baru Modern Fish Market, North Jakarta. In- formation regarding the presence of Selaroides leptolepis fish in the waters allows for effective conservation, and management of marine resources. A morphological identification of fish species is still considered inaccurate, so the molecular anal- ysis is necessary. This study aims to identify commercially important fish species deriving from Muara Baru Modern Fish Market, North Jakarta, employing mor- phological, and molecular analysis. A total of 30 specimens were collected from the field. The morphological analysis utilized a visual identification method, and morphometric measurement, while molecular analysis with DNA barcoding em- ployed the mitochondrial cytochrome oxidase subunit I (COI) gene. The results of the morphological analysis indicated that the fish species were yellowstripe scad (S. leptolepis). It also followed the results of molecular analysis of DNA barcoding that the fish was a S. leptolepis species. Therefore, the combination of morphological and genetic analysis has succeeded in identifying the fish species of S. leptolepis.
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- Agustina, S., Boer, M., & Fahrudin, A. (2015). Population dynamics of layur fish (Lep- turacanthus savala) resources in Sunda Strait. Marine Fisheries, 6(1): 77-85.
- Andriani, N., Saputra, S., & Hendrarto, B. (2015). Biological aspects and the level of utilization of yellow scad fish (Selaroides leptolepis) caught using cantrang nets in Pemalang Regency waters. Diponegoro Journal of Maquares, 4(4): 24–32.
- FAO. (1974). Identification sheets for fishery purpose "Fishing area East Indonesia Ocean, Western Central Pacific”. In Rome: UNDP/FAO Pub- lished (Vol. 4).
- Febrianti, A., Efrizal, T., & Zulfikar, A. (2013). Study of the condition of yellow scad (Selaroides leptolepis) based on the relationship between length and weight and condition factors in Natuna Sea landed at the Fish Market of Pelantar Kud Tanjungpinang. jurnal.umrah.ac.id: 1–8.
- Hebert, P. D. N., Cywinska, A., Ball, S. L., & DeWaard, J. R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal So- ciety B: Biological Sciences, 270(1512): 313– 321.
- Kamal, M. M. , Hakim, A. A., Butet, N. A., Fitrianing- sih, Y., & Astuti, R. (2019). Grouper species authentication based on gene markers MT-COI of Peukan Bada Waters, Aceh. Jurnal Bio- logi Tropis, 19(2): 116-123.
- Kempter, J., Kielpinski, M., Panicz, R., Mikolajczyk, K., & Keszka, S. (2015). Genetic Traceabil- ity of Selected Populations of The Yellow- stripe Scad, On The Analysis Of Microsatellite DNA - Celfish Project - Part 3. Acta Ichthyo- logica Et Piscatoria, 45: 299–305.
- KKP. (2018). Annual Report. 2018. Jakarta: Ministry of Marine Affairs and Fisheries.
- Leray, M., & Knowlton, N. (2015). DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity. Proceed- ings of the National Academy of Sciences of the United States of America, 112(7): 2076–2081.
- Madduppa, H. (2014). Bioekologi dan Biosistematika Ikan Terumbu. Bogor: PT Penerbit IPB Press.
- Jaafar, T. N. A. M., Taylor, M. I., Nor, S. A. M., Bruyn, M., & Carvalho, G. R. (2019). Comparative genetic stock structure in three species of com- mercially exploited Indo"Malay Carangidae (Teleosteii, Perciformes). Journal of Fish Biol- ogy, 96(2).
- Sharfina, M., Boer, M., & Ernawati, Y. (2014). Popula- tion dynamics of yellowstripe scad (Selaroides leptolepis) in Sunda Strait. Marine Fisheries, 5(1): 101–108.
- Supeni, E. A., & Almohdar, E. (2017). The growth pattern of yellow scad (Selaroides leptolepis) in Southeast Maluku Regency. Fish Scien- tiae, 7(2): 105–112.
- Triandiza, T., & Madduppa, H. (2018). Application of morphological analysis and DNA barcoding in determining the type of porcelain crab (Pisidia sp.) originating from Tunda Island, Banten. Jurnal Sumber- daya Akuatik Indopasifik, 2(2): 81–90.
- Wang, L., Wu, Z., Liu, M., Liu, W., Zhao, W., Liu, H., & You, F. (2018). DNA barcoding of marine fish species from Rongcheng Bay, China. PeerJ, 6: 1–19.
- Ward, R. D., Zemlak, T. S., Innes, B. H., Last, P. R., & Hebert, P. D. N. (2005). DNA barcoding Aus- tralia's fish species. Philosophical Transactions of the Royal Society B: Biological Sciences, 360(1462): 1847–1857.
- White, W. T., Last, P. R., Dharmadi, R., F., Chodrijah, U., Prisantoso, B., Blaber, S. J. (2013). Market fishes of Indonesia (ACIAR Mono). Canberra: Australian Centre for International Agricultural Research.
References
Agustina, S., Boer, M., & Fahrudin, A. (2015). Population dynamics of layur fish (Lep- turacanthus savala) resources in Sunda Strait. Marine Fisheries, 6(1): 77-85.
Andriani, N., Saputra, S., & Hendrarto, B. (2015). Biological aspects and the level of utilization of yellow scad fish (Selaroides leptolepis) caught using cantrang nets in Pemalang Regency waters. Diponegoro Journal of Maquares, 4(4): 24–32.
FAO. (1974). Identification sheets for fishery purpose "Fishing area East Indonesia Ocean, Western Central Pacific”. In Rome: UNDP/FAO Pub- lished (Vol. 4).
Febrianti, A., Efrizal, T., & Zulfikar, A. (2013). Study of the condition of yellow scad (Selaroides leptolepis) based on the relationship between length and weight and condition factors in Natuna Sea landed at the Fish Market of Pelantar Kud Tanjungpinang. jurnal.umrah.ac.id: 1–8.
Hebert, P. D. N., Cywinska, A., Ball, S. L., & DeWaard, J. R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal So- ciety B: Biological Sciences, 270(1512): 313– 321.
Kamal, M. M. , Hakim, A. A., Butet, N. A., Fitrianing- sih, Y., & Astuti, R. (2019). Grouper species authentication based on gene markers MT-COI of Peukan Bada Waters, Aceh. Jurnal Bio- logi Tropis, 19(2): 116-123.
Kempter, J., Kielpinski, M., Panicz, R., Mikolajczyk, K., & Keszka, S. (2015). Genetic Traceabil- ity of Selected Populations of The Yellow- stripe Scad, On The Analysis Of Microsatellite DNA - Celfish Project - Part 3. Acta Ichthyo- logica Et Piscatoria, 45: 299–305.
KKP. (2018). Annual Report. 2018. Jakarta: Ministry of Marine Affairs and Fisheries.
Leray, M., & Knowlton, N. (2015). DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity. Proceed- ings of the National Academy of Sciences of the United States of America, 112(7): 2076–2081.
Madduppa, H. (2014). Bioekologi dan Biosistematika Ikan Terumbu. Bogor: PT Penerbit IPB Press.
Jaafar, T. N. A. M., Taylor, M. I., Nor, S. A. M., Bruyn, M., & Carvalho, G. R. (2019). Comparative genetic stock structure in three species of com- mercially exploited Indo"Malay Carangidae (Teleosteii, Perciformes). Journal of Fish Biol- ogy, 96(2).
Sharfina, M., Boer, M., & Ernawati, Y. (2014). Popula- tion dynamics of yellowstripe scad (Selaroides leptolepis) in Sunda Strait. Marine Fisheries, 5(1): 101–108.
Supeni, E. A., & Almohdar, E. (2017). The growth pattern of yellow scad (Selaroides leptolepis) in Southeast Maluku Regency. Fish Scien- tiae, 7(2): 105–112.
Triandiza, T., & Madduppa, H. (2018). Application of morphological analysis and DNA barcoding in determining the type of porcelain crab (Pisidia sp.) originating from Tunda Island, Banten. Jurnal Sumber- daya Akuatik Indopasifik, 2(2): 81–90.
Wang, L., Wu, Z., Liu, M., Liu, W., Zhao, W., Liu, H., & You, F. (2018). DNA barcoding of marine fish species from Rongcheng Bay, China. PeerJ, 6: 1–19.
Ward, R. D., Zemlak, T. S., Innes, B. H., Last, P. R., & Hebert, P. D. N. (2005). DNA barcoding Aus- tralia's fish species. Philosophical Transactions of the Royal Society B: Biological Sciences, 360(1462): 1847–1857.
White, W. T., Last, P. R., Dharmadi, R., F., Chodrijah, U., Prisantoso, B., Blaber, S. J. (2013). Market fishes of Indonesia (ACIAR Mono). Canberra: Australian Centre for International Agricultural Research.