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Exploration of Antimicrobial Potency of Mangrove Symbiont Against Multi-Drug Resistant Bacteria
Corresponding Author(s) : Delianis Pringgenies
Jurnal Ilmiah Perikanan dan Kelautan, Vol. 13 No. 2 (2021): JURNAL ILMIAH PERIKANAN DAN KELAUTAN
Abstract
Highlight Research
- Antimicrobial potential against the test microbes
- Rhizhopora mucronata isolate showed 95% homology with Bacillus subtilis, and 97% homology with Bacillus oceanisediminis,
- Acanthus ilicifolius isolate showed 96% homology with Paracoccus caeni, and 89% homology with Bacillus circulans.
- The study found 4 isolates with antimicrobial potency against MDR pathogenic microbes.
- The symbiont microbes taken from Rhizophora mucronata and Acanthus ilicifolius were determined to be of the genus Bacillus and Paracoccus
Abstract
Antimicrobial property of mangrove symbiont have the ability to fight Multi Drug Resistant bacteria which were Staphylococcus aureus, Escherichia coli, and Vibrio haryeyi. This study aimed to determine the potential of symbiont microbes from the root of Rhizopora mucronata and Acanthus iilicifolius as antimicrobial agents against multi-drug resistant (MDR) pathogenic microbes. This research was conducted during July to November 2020. The MDR bacteria were S. aureus, E. coli, and V. harveyi MDR test microbes. The symbiont microbes were identified through molecular analyses (PCR 16S rDNA). Isolation of symbiont microbes from R. mucronata resulted in 16 isolates, while isolation from A. iilicifolius resulted in 14 isolates. Based on the antimicrobial qualitative test against S.aureus, 8 out of 16 microbial isolates from R. mucronata were found to show antimicrobial properties. The testing of A. ilicifolius symbiont microbes against S. aureus showed 8 out of 14 isolates with antimicrobial properties. The test against E. coli resulted in 2 out of 16 microbial isolates from R. mucronata and 5 out of 14 isolates from A. ilicifolius with antimicrobial properties. The test against V. harveyi resulted in two out of 16 microbial isolates from R.mucronata and 4 out of 14 isolates from A. ilicifolius with antimicrobial properties. The quantitative test found 2 isolates from R. mucronta, namely isolates RM10 and RM12, with antimicrobial properties against MDR strain E. coli, with the best isolate being RM10, which produced 11.22 mm of inhibition zone diameter. Furthermore, the selection of isolates was based on the size of the inhibition zone, the clearness of the inhibition zone and the potential for antibacterial activity. Based on their overall antimicrobial potential against the test microbes, four isolates were selected. Molecular analyses of RM12 isolate showed 95% homology with Bacillus subtilis, of RM 10 isolate showed 97% homology with Bacillus oceanisediminis, of AC isolate showed 96% homology with Paracoccus caeni, and of AC 5 isolate showed 89% homology with Bacillus circulans. The study found four isolates with antimicrobial potency against MDR pathogenic microbes. The symbiont microbes taken from R. mucronata and A. ilicifolius were determined to be of the genus Bacillus and Paracoccus.
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- Alebouyeh, M. P. G. O., Tajbakhsh, M., Tajeddin, E. S. J. S., & Nazemalhosseini, E. (2011). Fatal sepsis by Bacillus circulans in an immunocompromised patient. Iranian Journal of Microbiology, 3(3):156-158.
- Altarugio, R., Vellano, I. H. B., Moraes, A. C. I., Milbradt, E. L., Filho, R. L. A., Guimarí£es-Okamoto, P. T. C., Padovani, C. R., & Okamoto, A. S. (2018). In vitro probiotic selection and characterization of Lactobacillus spp. isolated from healthy domesticated Turkeys. Journal of Applied Poultry Research, 27(1):81-91.
- Ariyanto, D. (2019). Food preference on Telescopium telescopium ( Mollusca: Gastropoda ) based on food sources in mangrove. Plant Archives, 19(1):913-916.
- Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2018a). Short Communication: The relationship between content of particular metabolites of fallen mangrove leaves and the rate at which the leaves decompose over time. Biodiversitas, 19(3):780-785.
- Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2018b). The association of Cassidula nucleus (Gmelin 1791) and Cassidula angulifera (Petit 1841) with mangrove in banggi coast, Central Java, Indonesia. AACL Bioflux, 11(2):348-361.
- Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2019a). The physicochemical factors and litter dynamics (Rhizophora mucronata Lam. and Rhizophora stylosa Griff) of replanted mangroves, Rembang, Central Java, Indonesia. Environment and Natural Resources Journal, 17(4):11-19.
- Ariyanto, D., Gunawan, H., Puspitasari, D., Ningsih, S. S., Jayanegara, A., & Hamim, H. (2019b). the differences of the elements content in Rhizophora mucronata leaves from Asahan Regency, North Sumatra, Indonesia. Polish Journal of Natural Sciences, 34(4):481-491.
- Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2020). Distribution and abundance of Cerithideopsilla djadjariensis (Martin 1899) (Potamididae) on Avicennia marina in Rembang, Central Java, Indonesia. Egyptian Journal of Aquatic Biology and Fisheries, 24(3):323-332.
- Badieyan, S., Dilmaghani-Marand, A., Hajipour, M. J., Ameri, A., Razzaghi, M. R., Rafii-Tabar, H., Mahmoudi, M., & Sasanpour, P. (2018). Detection and discrimination of bacterial colonies with mueller matrix imaging. Scientific Reports, 8(1):1-10.
- Bahry, M. S., & Pringgenies, D. (2016). Isolasi bakteri simbion moluska penghasil senyawa antibakteri multi drug resistant (MDR). Prosiding Seminar Nasional Tahunan & Ke-V Hasil-Hasil Penelitian Perikanan Dan Kelautan, pp. 493-499.
- Balouiri, M., Sadiki, M., & Ibnsouda, S. K. (2016). Methods for in vitro evaluating antimicrobial activity: A review. Journal of Pharmaceutical Analysis, 6(2):71-79.
- Celandroni, F., Salvetti, S., Gueye, S. A., Mazzantini, D., Lupetti, A., Senesi, S., & Ghelardi, E. (2016). Identification and pathogenic potential of clinical Bacillus and Paenibacillus isolates. PLoS ONE, 11(3):1-13.
- Demain, A. L., & Fang, A. (2000). The natural functions of secondary metabolites. Advances in Biochemical Engineering/Biotechnology, 69:1-39.
- Gómez-García, M., Sol, C., De Nova, P. J. G., Puyalto, M., Mesas, L., Puente, H., Mencía-Ares, í“., Miranda, R., Argüello, H., Rubio, P., & Carvajal, A. (2019). Antimicrobial activity of a selection of organic acids, their salts and essential oils against swine enteropathogenic bacteria. Porcine Health Management, 5(32):1-8.
- Hashmi, I., Bindschedler, S., & Junier, P. (2020). Firmicutes. In N. Amaresan, M. Senthil Kumar, K. Annapurna, K. Kumar, A. Sankaranarayanan (Eds.), Beneficial Microbes in Agro-Ecology. Cambridge: Academic Press.
- Jiang, L., Wang, F., Han, F., Prinyawiwatkul, W., No, H. K., & Ge, B. (2013). Evaluation of diffusion and dilution methods to determine the antimicrobial activity of water-soluble chitosan derivatives. Journal of Applied Microbiology, 114(4):956-963.
- Kaushal, J., Mehandia, S., Singh, G., Raina, A., & Arya, S. K. (2018). Catalase enzyme: Application in bioremediation and food industry. Biocatalysis and Agricultural Biotechnology, 16:192-199.
- Kelsic, E. D., Zhao, J., Vetsigian, K., & Kishony, R. (2015). Counteraction of antibiotic production and degradation stabilizes microbial communities. Nature, 521:516-519.
- Kurhekar. J. V. (2016). Tannins - antimicrobial chemical components. International Journal of Technology and Science, IX(3):5-9.
- Lee, L. H., Cheah, Y. K., Nurul Syakima, A. M., Shiran, M. S., Tang, Y. L., Lin, H. P., & Hong, K. (2012a). Analysis of Antarctic protobacteria by PCR fingerprinting and screening for antimicrobial secondary metabolites. Genetics and Molecular Research, 11(2):1627-1641.
- Lee, Y. J., Lee, S. J., Jeong, H., Kim, H. J., Ryu, N., Kim, B. C., Lee, H. S., Lee, D. W., & Lee, S. J. (2012b). Draft genome sequence of Bacillus oceanisediminis 2691. Journal of Bacteriology, 194(22):6351-6352.
- Li, J., Xie, S., Ahmed, S., Wang, F., Gu, Y., Zhang, C., Chai, X., Wu, Y., Cai, J., & Cheng, G. (2017). Antimicrobial activity and resistance: Influencing factors. Frontiers in Pharmacology, 8:1-11.
- Lopanik, N. B. (2014). Chemical defensive symbioses in the marine environment. Functional Ecology, 28(2):328-340.
- Mitri, S., & Foster, K, R. (2013). The genotypic view of social interactions in microbial communities. Annual Review of Genetics, 47:247-273.
- Osti, R., Tanaka, S., & Tokioka, T. (2009). The importance of mangrove forest in tsunami disaster mitigation. Disasters, 33(2):203-213.
- Peh, E., Kittler, S., Reich, F., & Kehrenberg, C. (2020). Antimicrobial activity of organic acids against Campylobacter spp. and development of combinations - a synergistic effect? PLoS ONE, 15(9):1-13.
- Pringgenies, D., Setyati, W. A., Wibowo, D. S., & Djunaedi, A. (2020). Aktivitas antibakteri ekstrak jeruju acanthus ilicifolius terhadap bakteri Multi Drug Resistant. Jurnal Kelautan Tropis, 23(2):145-156.
- Pringgenies. D., Pratiwi, A. H. D., Yudiati, E., Azizah, R., & Susilo, E. S. (2017). Biopigment tracing of mangrove Rhizophora mucrota leaf and bark waste and its application for batik dyeing by multiple fixations. Proceeding of Basic sciences for improving survival and quality of life. Malang: Universitas Brawijaya.
- Pringgenies, D., Azmi, I., Ridho, A., & Idris, R. (2016). Exploration of bacteria symbionts mangrove waste for the production of decomposter. Oceanography, 4(1):33.
- Pringgenies, D., Jumiati, M., & Ridho, A. (2015). Antibacterial activity test of nudibranches polka - dot (Jorunna funebris) (Gastropods: Molusc) extract against multi drug resistant (MDR). Ilmu Kelautan: Indonesian Journal of Marine Sciences, 20(4):195-206.
- Pringgenies, D., & Renta, P. P. (2014). Bacterial symbiont Gastropoda Pleuroploca trapezium from Ternate, as alternative antibacterial MDR. ILMU KELAUTAN: Indonesian Journal of Marine Sciences, 19(1):55-62.
- Pringgenies, D., Rudiyanti, S., & Yudiati, E. (2018). Exploration of sea cucumbers Stichopus hermanii from Karimunjawa Islands as production of marine biological resources. IOP Conference Series: Earth and Environmental Science, 116:1–8.
- Pringgenies, D., Yudiati, E., Djunaedi, A., Santosa, G. W., & Koesoemadji. (2019). Explorations of symbiotic microbe from sea cucumber gut as an anti-multi-drug resistant microbe agent for utilization in hand sanitizer products. AACL Bioflux, 12(3):737-747.
- Quadros, A. F., & Zimmer, M. (2017). Dataset of true mangroves plant species traits. Biodiversity Data Journal, 5(e22089):1-20.
- Ragavan, P., Saxena, A., Mohan, P. M., Jayaraj, R. S. C., & Ravichandran, K. (2015). Taxonomy and distribution of species of the genus Acanthus (Acanthaceae) in mangroves of the Andaman and Nicobar Islands, India. Biodiversitas, 16(2):225-236.
- Sune, D., Rydberg, H., Augustinsson, í…. N., Serrander, L., & Jungeström, M. B. (2020). Optimization of 16S rRNA gene analysis for use in the diagnostic clinical microbiology service. Journal of Microbiological Methods, 170:105854.
- SusiÄ, N., JanežiÄ, S., Rupnik, M., & Stare, B. G. (2020). Whole genome sequencing and comparative genomics of two nematicidal Bacillus strains reveals a wide range of possible virulence factors. G3: Genes, Genomes, Genetics, 10(3):881-890.
- Ventola, L. (2015). The antibiotic resistance crisis. Pharmacy and Therapeutics, 40(4):277-283.
- Yang, Y., Yang, S., Li, J., Deng, Y., Zhang, Z., Xu, S., Guo, W., Zhong, C., Zhou, R., & Shi, S. (2015). Transcriptome analysis of the holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones. BMC Genomics, 16(605):1-12.
References
Alebouyeh, M. P. G. O., Tajbakhsh, M., Tajeddin, E. S. J. S., & Nazemalhosseini, E. (2011). Fatal sepsis by Bacillus circulans in an immunocompromised patient. Iranian Journal of Microbiology, 3(3):156-158.
Altarugio, R., Vellano, I. H. B., Moraes, A. C. I., Milbradt, E. L., Filho, R. L. A., Guimarí£es-Okamoto, P. T. C., Padovani, C. R., & Okamoto, A. S. (2018). In vitro probiotic selection and characterization of Lactobacillus spp. isolated from healthy domesticated Turkeys. Journal of Applied Poultry Research, 27(1):81-91.
Ariyanto, D. (2019). Food preference on Telescopium telescopium ( Mollusca: Gastropoda ) based on food sources in mangrove. Plant Archives, 19(1):913-916.
Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2018a). Short Communication: The relationship between content of particular metabolites of fallen mangrove leaves and the rate at which the leaves decompose over time. Biodiversitas, 19(3):780-785.
Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2018b). The association of Cassidula nucleus (Gmelin 1791) and Cassidula angulifera (Petit 1841) with mangrove in banggi coast, Central Java, Indonesia. AACL Bioflux, 11(2):348-361.
Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2019a). The physicochemical factors and litter dynamics (Rhizophora mucronata Lam. and Rhizophora stylosa Griff) of replanted mangroves, Rembang, Central Java, Indonesia. Environment and Natural Resources Journal, 17(4):11-19.
Ariyanto, D., Gunawan, H., Puspitasari, D., Ningsih, S. S., Jayanegara, A., & Hamim, H. (2019b). the differences of the elements content in Rhizophora mucronata leaves from Asahan Regency, North Sumatra, Indonesia. Polish Journal of Natural Sciences, 34(4):481-491.
Ariyanto, D., Bengen, D. G., Prartono, T., & Wardiatno, Y. (2020). Distribution and abundance of Cerithideopsilla djadjariensis (Martin 1899) (Potamididae) on Avicennia marina in Rembang, Central Java, Indonesia. Egyptian Journal of Aquatic Biology and Fisheries, 24(3):323-332.
Badieyan, S., Dilmaghani-Marand, A., Hajipour, M. J., Ameri, A., Razzaghi, M. R., Rafii-Tabar, H., Mahmoudi, M., & Sasanpour, P. (2018). Detection and discrimination of bacterial colonies with mueller matrix imaging. Scientific Reports, 8(1):1-10.
Bahry, M. S., & Pringgenies, D. (2016). Isolasi bakteri simbion moluska penghasil senyawa antibakteri multi drug resistant (MDR). Prosiding Seminar Nasional Tahunan & Ke-V Hasil-Hasil Penelitian Perikanan Dan Kelautan, pp. 493-499.
Balouiri, M., Sadiki, M., & Ibnsouda, S. K. (2016). Methods for in vitro evaluating antimicrobial activity: A review. Journal of Pharmaceutical Analysis, 6(2):71-79.
Celandroni, F., Salvetti, S., Gueye, S. A., Mazzantini, D., Lupetti, A., Senesi, S., & Ghelardi, E. (2016). Identification and pathogenic potential of clinical Bacillus and Paenibacillus isolates. PLoS ONE, 11(3):1-13.
Demain, A. L., & Fang, A. (2000). The natural functions of secondary metabolites. Advances in Biochemical Engineering/Biotechnology, 69:1-39.
Gómez-García, M., Sol, C., De Nova, P. J. G., Puyalto, M., Mesas, L., Puente, H., Mencía-Ares, í“., Miranda, R., Argüello, H., Rubio, P., & Carvajal, A. (2019). Antimicrobial activity of a selection of organic acids, their salts and essential oils against swine enteropathogenic bacteria. Porcine Health Management, 5(32):1-8.
Hashmi, I., Bindschedler, S., & Junier, P. (2020). Firmicutes. In N. Amaresan, M. Senthil Kumar, K. Annapurna, K. Kumar, A. Sankaranarayanan (Eds.), Beneficial Microbes in Agro-Ecology. Cambridge: Academic Press.
Jiang, L., Wang, F., Han, F., Prinyawiwatkul, W., No, H. K., & Ge, B. (2013). Evaluation of diffusion and dilution methods to determine the antimicrobial activity of water-soluble chitosan derivatives. Journal of Applied Microbiology, 114(4):956-963.
Kaushal, J., Mehandia, S., Singh, G., Raina, A., & Arya, S. K. (2018). Catalase enzyme: Application in bioremediation and food industry. Biocatalysis and Agricultural Biotechnology, 16:192-199.
Kelsic, E. D., Zhao, J., Vetsigian, K., & Kishony, R. (2015). Counteraction of antibiotic production and degradation stabilizes microbial communities. Nature, 521:516-519.
Kurhekar. J. V. (2016). Tannins - antimicrobial chemical components. International Journal of Technology and Science, IX(3):5-9.
Lee, L. H., Cheah, Y. K., Nurul Syakima, A. M., Shiran, M. S., Tang, Y. L., Lin, H. P., & Hong, K. (2012a). Analysis of Antarctic protobacteria by PCR fingerprinting and screening for antimicrobial secondary metabolites. Genetics and Molecular Research, 11(2):1627-1641.
Lee, Y. J., Lee, S. J., Jeong, H., Kim, H. J., Ryu, N., Kim, B. C., Lee, H. S., Lee, D. W., & Lee, S. J. (2012b). Draft genome sequence of Bacillus oceanisediminis 2691. Journal of Bacteriology, 194(22):6351-6352.
Li, J., Xie, S., Ahmed, S., Wang, F., Gu, Y., Zhang, C., Chai, X., Wu, Y., Cai, J., & Cheng, G. (2017). Antimicrobial activity and resistance: Influencing factors. Frontiers in Pharmacology, 8:1-11.
Lopanik, N. B. (2014). Chemical defensive symbioses in the marine environment. Functional Ecology, 28(2):328-340.
Mitri, S., & Foster, K, R. (2013). The genotypic view of social interactions in microbial communities. Annual Review of Genetics, 47:247-273.
Osti, R., Tanaka, S., & Tokioka, T. (2009). The importance of mangrove forest in tsunami disaster mitigation. Disasters, 33(2):203-213.
Peh, E., Kittler, S., Reich, F., & Kehrenberg, C. (2020). Antimicrobial activity of organic acids against Campylobacter spp. and development of combinations - a synergistic effect? PLoS ONE, 15(9):1-13.
Pringgenies, D., Setyati, W. A., Wibowo, D. S., & Djunaedi, A. (2020). Aktivitas antibakteri ekstrak jeruju acanthus ilicifolius terhadap bakteri Multi Drug Resistant. Jurnal Kelautan Tropis, 23(2):145-156.
Pringgenies. D., Pratiwi, A. H. D., Yudiati, E., Azizah, R., & Susilo, E. S. (2017). Biopigment tracing of mangrove Rhizophora mucrota leaf and bark waste and its application for batik dyeing by multiple fixations. Proceeding of Basic sciences for improving survival and quality of life. Malang: Universitas Brawijaya.
Pringgenies, D., Azmi, I., Ridho, A., & Idris, R. (2016). Exploration of bacteria symbionts mangrove waste for the production of decomposter. Oceanography, 4(1):33.
Pringgenies, D., Jumiati, M., & Ridho, A. (2015). Antibacterial activity test of nudibranches polka - dot (Jorunna funebris) (Gastropods: Molusc) extract against multi drug resistant (MDR). Ilmu Kelautan: Indonesian Journal of Marine Sciences, 20(4):195-206.
Pringgenies, D., & Renta, P. P. (2014). Bacterial symbiont Gastropoda Pleuroploca trapezium from Ternate, as alternative antibacterial MDR. ILMU KELAUTAN: Indonesian Journal of Marine Sciences, 19(1):55-62.
Pringgenies, D., Rudiyanti, S., & Yudiati, E. (2018). Exploration of sea cucumbers Stichopus hermanii from Karimunjawa Islands as production of marine biological resources. IOP Conference Series: Earth and Environmental Science, 116:1–8.
Pringgenies, D., Yudiati, E., Djunaedi, A., Santosa, G. W., & Koesoemadji. (2019). Explorations of symbiotic microbe from sea cucumber gut as an anti-multi-drug resistant microbe agent for utilization in hand sanitizer products. AACL Bioflux, 12(3):737-747.
Quadros, A. F., & Zimmer, M. (2017). Dataset of true mangroves plant species traits. Biodiversity Data Journal, 5(e22089):1-20.
Ragavan, P., Saxena, A., Mohan, P. M., Jayaraj, R. S. C., & Ravichandran, K. (2015). Taxonomy and distribution of species of the genus Acanthus (Acanthaceae) in mangroves of the Andaman and Nicobar Islands, India. Biodiversitas, 16(2):225-236.
Sune, D., Rydberg, H., Augustinsson, í…. N., Serrander, L., & Jungeström, M. B. (2020). Optimization of 16S rRNA gene analysis for use in the diagnostic clinical microbiology service. Journal of Microbiological Methods, 170:105854.
SusiÄ, N., JanežiÄ, S., Rupnik, M., & Stare, B. G. (2020). Whole genome sequencing and comparative genomics of two nematicidal Bacillus strains reveals a wide range of possible virulence factors. G3: Genes, Genomes, Genetics, 10(3):881-890.
Ventola, L. (2015). The antibiotic resistance crisis. Pharmacy and Therapeutics, 40(4):277-283.
Yang, Y., Yang, S., Li, J., Deng, Y., Zhang, Z., Xu, S., Guo, W., Zhong, C., Zhou, R., & Shi, S. (2015). Transcriptome analysis of the holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones. BMC Genomics, 16(605):1-12.