Issue

2024: IN PRESS ISSUE (JUST ACCEPTED MANUSCRIPT, 2024)

Date Log

Submitted
April 9, 2024
Accepted
July 23, 2024
Published
September 9, 2024

Copyright (c) 2024 Jurnal Ilmiah Perikanan dan Kelautan

Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

1. Copyright of the article is transferred to the journal, by the knowledge of the author, whilst the moral right of the publication belongs to the author.

2. The legal formal aspect of journal publication accessibility refers to Creative Commons Atribusi-Non Commercial-Share alike (CC BY-NC-SA),  (https://creativecommons.org/licenses/by-nc-sa/4.0/)

3. The articles published in the journal are open access and can be used for non-commercial purposes. Other than the aims mentioned above, the editorial board is not responsible for copyright violation

 

The manuscript authentic and copyright statement submission can be downloaded ON THIS FORM. 

Marine Science Fisheries Biotechnology Molecular Genetics Oceanography DNA Barcoding

The Genetic Diversity of Bali Sardinella (Sardinella lemuru) Caught at Bali Strait and Its Possible Relation to The Ocean Circulation

https://doi.org/10.20473/jipk.vi.56670
Aida Sartimbul
Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0002-4648-4990
I Gusti Ayu Diah Hendiari
Faculty of Fisheries and Marine Science, Udayana University, Indonesia
https://orcid.org/0000-0003-1663-6823
I Wayan Arthana
Faculty of Fisheries and Marine Science, Udayana University, Indonesia
https://orcid.org/0000-0003-2298-2255
Gde Raka Angga Kartika
Faculty of Fisheries and Marine Science, Udayana University, Indonesia
https://orcid.org/0000-0002-1825-5621
Victor Adi Winata
Master's Degree Program, Faculty of Fisheries and Marine Science, Universitas Brawijaya
https://orcid.org/0000-0001-5261-6382
Widodo Setiyo Pranowo
Department of Hydrography, Indonesian Naval Postgraduate School (STTAL), East Ancol, Jakarta
https://orcid.org/0000-0002-5798-4181
Raden Dwi Susanto
Department of Atmospheric and Oceanic Science, University of Maryland, College Park, USA
https://orcid.org/0000-0003-1495-5951
Erfan Rohadi
Department of Information Technology, State Polytechnic of Malang, Indonesia
https://orcid.org/0000-0001-6459-8337
Nurul Muslihah
Department of Nutrition Science, Faculty of Medicine, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0003-4747-7239
Defri Yona
Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0003-4266-9071
Feni Iranawati
Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0002-6307-3368

Corresponding Author(s) : Aida Sartimbul

aida@ub.ac.id

Jurnal Ilmiah Perikanan dan Kelautan, 2024: IN PRESS ISSUE (JUST ACCEPTED MANUSCRIPT, 2024)

Abstract

Graphical Abstract



Highlight Research



  • A low sequence divergence of lemuru between Bali Strait and the northern latitude.

  • S. lemuru migration route through ITF will maintain its nucleotide variation.

  • The high haplotype diversity of lemuru is a testament to its adaptability.

  • S. lemuru's high haplotype diversity supports their stock recovery in the Bali Strait.

  • Two sardine species are morphologically and genetically highly distinct, even though they prefer overlapping water mass conditions from each other.


Abstract


Sardinella lemuru is known as the native pelagic fish of the Bali Strait. However, its presence has become difficult to find recently. This study aimed to validate S. lemuru using molecular taxonomy and link it to water circulations for sustainable management. It is the first study of relatively complete sequence data on S. lemuru in the Bali Strait. A total of 47 sequences were amplified using the control region gene of mitochondrial DNA. Other S. lemuru (n = 4) and Amblygaster sirm (n = 12) sequences were retrieved from GenBank. Low sequence divergence is observed in clade-1 of S. lemuru across the Bali Strait, Manado-Sulawesi, and Kudat-Malaysia. This is probably due to its migration using the main Indonesian ThroughFlow (ITF). There is evolutionary divergence between two groups of S. lemurs, measuring 35.3%±4.1. The first signs of these cryptic groups were found at Canggu and Prigi, with 87 base-pair differences between the two groups. This study also presents strong evidence that A. sirm prefers overlapping water mass conditions with S. lemuru in the Bali Strait but is morphologically and genetically distinct. Notably, three samples of A. sirm in Kedonganan-Bali are clustered with other A. sirm locations passed by the primary and secondary South China Sea throughflow. The high genetic diversity of S. lemuru among Bali Strait sites demonstrates its adaptive ability, with scattered single-frequency haplotypes. The adaptive ability traits of S. lemuru support its stock recovery. The stock recovery recommendation is based on finding S. lemuru's adaptive traits within their populations in suitable habitats and climatic conditions.

Keywords

Genetic Distance, Haplotype Connectivity, Phylogenetics, Sardine fisheries, Sequence Divergence, Water Circulation
Sartimbul, A., Hendiari, I. G. A. D. ., Arthana, . I. W. ., Kartika, G. R. A. ., Winata, V. A. ., Pranowo, W. S. ., Susanto, R. D. ., Rohadi, E. ., Muslihah, N. ., Yona, D. ., & Iranawati, F. . (2024). The Genetic Diversity of Bali Sardinella (Sardinella lemuru) Caught at Bali Strait and Its Possible Relation to The Ocean Circulation . Jurnal Ilmiah Perikanan Dan Kelautan. https://doi.org/10.20473/jipk.vi.56670
Download Citation
Endnote/Zotero/Mendeley (RIS)
BibTeX
References
  1. Ackiss, A. S., Pardede, S., Crandall, E. D., Ablan-Lagman, M. C. A., Ambariyanto, Romena, N., Barber, P. H., & Carpenter, K. E. (2013). Pronounced genetic structure in a highly mobile coral reef fish, Caesio cuning, in the Coral Triangle. Marine Ecology Progress Series, 480(1):185-197.
  2. Afifah, N., Zairion, Z., Maduppa, H. H., Hakim, A. A., & Wardiatno, Y. (2020). Identifying blue swimming crab (Portunus pelagicus) stocks with truss network analysis approach in Indonesian fisheries management area 712. Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (Journal of Natural Resources and Environmental Management), 10(3):390-401.
  3. Akbar, N., & Aris, M. (2018). Genetic population structure of yellowfin tuna (Thunnus albacares) as based data of fish conservation in North Mallucas Sea. Omni-Akuatika, 14(3):75-85.
  4. Allen, G. R., Erdmann, M. V., & Purtiwi, P. D. (2017). Descriptions of four new species of damselfishes (Pomacentridae) in the Pomacentrus philippinus complex from the tropical western Pacific Ocean. Journal of the Ocean Science Foundation, 25(1):47-76.
  5. AquaMaps. (2019). Computer generated distribution maps for Sardinella lemuru (Bali Sardinella), with modelled year 2050 native range map based on IPCC RCP8.5 emissions scenario.
  6. Ardura, A., Planes, S., & Garcia-Vazquez, E. (2013). Applications of DNA barcoding to fish landings: Authentication and diversity assessment. ZooKeys, 365(1):49-65.
  7. Arifan, F., & Wikanta, D. K. (2011). Optimizing the production of lemuru fish (Sardinella longiceps) high in omega-3 fatty acids using a fermentation process by lactic acid bacteria. Paper Presented at the Proceedings of the National Seminar on Science and Technology, University of Wahid Hasyim, Indonesia.
  8. Bramandito, A., Subhan, B., Prartono, T., Anggraini, N. P., Januar, H. I., & Madduppa, H. H. (2018). Genetic diversity and population structure of Siganus fuscescens across urban reefs of Seribu Islands, Northern of Jakarta, Indonesia. Biodiversitas, 19(6):1993-2002.
  9. Bray, J. R., & Curtis, J. T. (1957). An ordination of the upland forest communities of Southern Wisconsin. Ecological Monographs, 27(4):325-349.
  10. Buchary, E. (2010). In search of viable policy options for responsible use of sardine resources in the Bali Strait, Indonesia. Doctoral thesis. Vancouver: University of British Columbia Library.
  11. Burhanuddin, Hutomo, M., Martosewojo, S., & Djamali, A. (1974). Several aspects of the biology of lemuru fish, Sardinella sirm (Walbaum) in Panggang Island waters. Oseanologi di Indonesia, 2(1):17-25.
  12. Carpenter, K. E., & Niem, V. H. (1999). The living marine resources of the Western Central Pacific. Rome: FAO.
  13. Chan, S. W., Cheang, C. C., Chirapart, A., Gerung, G., Tharith, C., & Ang, P. (2013). Homogeneous population of the brown alga Sargassum polycystum in Southeast Asia: Possible role of recent expansion and asexual propagation. Plos One, 8(10):1-9.
  14. Chan, A. F. O., Luczon, A. U., Fontanilla, I. K. C., Ong, P. S., Santos, M. D., Willette, D. A., & Quilang, J. P. (2019). DNA barcoding cannot discriminate between Sardinella tawilis and S. hualiensis (Clupeiformes: Clupeidae). Mitochondrial DNA. Part B, 4(2):2499-2503.
  15. Chandrasekar, S., Sivakumar, R., Mathialagan, R., Subburaj, J., & Thangaraj, M. (2019). Population genetic structure of Etroplus suratensis Bloch, 1790 in South India: Preliminary evidence of founder haplotypes shared among populations. Journal of Asia-Pacific Biodiversity 12(1):376-381.
  16. Checkley, D. M., Asch, R. G., & Rykaczewski, R. R. (2017). Climate, anchovy, and sardine. Annual Review of Marine Science, 9(1):469-493.
  17. Dharmayanti, N. L. P. (2011). Molecular phylogenetic: Organism taxonomy method based on evolution history. Wartazoa, 21(1):1-10.
  18. Ekawati, S. N. S. (2017). Analysis of the population structure of tembang fish (Sardinella fimbriata) from the Southern Waters of East Java and the Madura Strait using DNA sequencing techniques. Malang: Brawijaya University.
  19. Emery, W. J., & Meincke, J. (1986). Global water masses: Summary and review. Oceanologica acta, 9(4):383-391.
  20. Fang, G., Susanto, R. D., Wirasantosa, S., Qiao, F., Supangat, A., Fan, B., Wei, Z., Sulistiyo, B., & Li, S. (2010). Volume, heat, and freshwater transports from the South China Sea to Indonesian seas in the boreal winter of 2007-2008. Journal of Geophysical Research, 115(C12):1-11.
  21. FAO-FIGIS. (2005). A world overview of species of interest to fisheries. Chapter: Sardinella lemuru. FIGIS species fact sheets. species identification and data programme-SIDP.
  22. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39(4):783-791.
  23. Froese, R., & Pauly, D. (2024). FishBase. World Wide Web Electronic Publication.
  24. Goodbody-Gringley, G., Strand, E., & Pitt, J. M. (2019). Molecular characterization of nearshore baitfish populations in Bermuda to inform management. PeerJ, 7(1):1-18.
  25. Gordon, A. L., Susanto, R. D., Ffield, A., Huber, B. A., Pranowo, W., & Wirasantosa, S. (2008). Makassar Strait throughflow, 2004 to 2006. Geophysical Research Letters, 35(24):1-5.
  26. Gordon, A. L., Sprintall, J., Van Aken, H. M., Susanto, R. D., Wijffels, S., Molcard, R., Ffield, A., Pranowo, W., & Wirasantosa, S. (2010). The Indonesian throughflow during 2004-2006 as observed by the INSTANT program. Dynamics of Atmospheres and Oceans, 50(1):115-128.
  27. Guo, X. Z., Zhang, G. R., Wei, K. J., Ji, W., Yan, R. J., Wei, Q. W., & Gardner, J. P. A. (2019). Phylogeography of the threatened tetraploid fish, Schizothorax waltoni, in the Yarlung Tsangpo River on the Southern Qinghai-Tibet Plateau: Implications for conservation. Scientific Reports, 9(1):1-16.
  28. Hadi, S., Andayani, N., Muttaqin, E., Simeon, B. M., Ichsan, M., Subhan, B., & Madduppa, H. (2020). Genetic connectivity of the scalloped hammerhead shark Sphyrna lewini across Indonesia and the Western Indian Ocean. Plos One, 15(10):1-14.
  29. Hammer, Ø., Harper, D. A. T., & Ryan, P. D. (2001). Past: Paleontological statistics software package for education and data analysis. Palaeontologia Electronica, 4(1):1-9.
  30. Hendiarti, N., Siegel, H., & Ohde, T. (2004). Investigation of different coastal processes in Indonesian waters using SeaWiFS data. Deep-Sea Research Part II: Topical Studies in Oceanography, 51(1):85-97.
  31. Hendiarti, N., Suwarso, Aldrian, E., Amri, K., Andiastuti, R., Sachoemar, S. I., & Wahyono, I. B. (2005). Seasonal variation of pelagic fish catch around Java. Oceanography, 18(4):112-123.
  32. Himelda, Wiyono, E. S., Purbayanto, A., & Mustaruddin (2011). Analysis of the sardine oil (Sardinella lemuru Bleeker 1853) resources in Bali Strait. Marine Fisheries, 2(2):165-176.
  33. Ho, D. J., Maryam, D. S., Jafar-Sidik, M., & Aung, T. (2013). Influence of weather condition on pelagic fish landings in Kota Kinabalu, Sabah, Malaysia. Journal of Tropical Biology and Conservation, 10(1):11-21.
  34. Hughes, A. R., Inouye, B. D., Johnson, M. T. J., Underwood, N., & Vellend, M. (2008). Ecological consequences of genetic diversity. Ecology Letters, 11(1):609-623.
  35. Hüssy, K., Mosegaard, H., Albertsen, C. M., Nielsen, E. E., Hemmer-Hansen, J., & Eero, M. (2016). Evaluation of otolith shape as a tool for stock discrimination in marine fishes using Baltic Sea cod as a case study. Fisheries Research, 174(1):210-218.
  36. Ikhsani, S. N. (2017). Genetic diversity analysis of lemuru (Sardinella lemuru) in the fishing ground in Southern Waters of East Java based on the D-Loop sequence of mitochondrial DNA. Undergraduate thesis. Malang: Department of Utilization of Fisheries and Marine Resources Universitas Brawijaya.
  37. Irmawati (2016). Genetics of fish populations. Yogyakarta: CV. Andi Offset.
  38. Jackson, A. M., Ambariyanto, Erdmann, M. V, Toha, A. H. A., Stevens, L. A., & Barber, P. H. (2014). Phylogeography of commercial tuna and mackerel in the Indonesian Archipelago. Bulletin of Marine Science, 90(1):471-492.
  39. Jiang, H., Gong, L., Liu, L., Liu, B., & Lü, Z. (2018). The complete mitochondrial genome of Sardinella lemuru (Clupeinae, Clupeidae, Clupeoidei) and phylogenetic studies of Clupeoidei. Mitochondrial DNA Part B, 3(1):50-52.
  40. Kartika, G. R. A., Sartimbul, A., & Widodo. (2017). Genetic variance of Sardinella lemuru in the Bali Strait Waters. Jurnal Kelautan (Indonesian Journal of Marine Science and Technology), 10(1):21-28.
  41. Khoddami, A., Ariffin, A. A., Bakar, J., & Ghazali, H. M. (2009). Fatty acid profile of the oil extracted from fish waste (head, intestine and liver) (Sardinella lemuru). World Applied Sciences Journal, 7(1):127-131.
  42. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16(1):111-120.
  43. Kusuma, A. B., Bengen, D. G., Madduppa, H., Subhan, B., Arafat, D., & Negara, B. F. S. P. (2016). Close genetic connectivity of soft coral Sarcophyton trocheliophorum in Indonesia and its implication for marine protected area. Aceh Journal of Animal Science, 1(2):50-57.
  44. Labrador, K., Agmata, A., Palermo, J. D., Ravago-Gotanco, R., & Pante, M. J. (2021). Mitochondrial DNA reveals genetically structured haplogroups of Bali Sardinella (Sardinella lemuru) in Philippine waters. Regional Studies in Marine Science, 41(1):1-14.
  45. Labrador, K., Palermo, J. D., Agmata, A., Ravago-Gotanco, R., & Pante, M. J. (2022). Restriction site-sssociated DNA sequencing reveals local adaptation despite high levels of gene flow in Sardinella lemuru (Bleeker, 1853) along the Northern Coast of Mindanao, Philippines. Frontiers in Marine Science, 9(1):1-18.
  46. Lavoué, S., Sullivan, J. P., & Hopkins, C. D. (2003). Phylogenetic utility of the first two introns of the S7 ribosomal protein gene in African electric fishes (Mormyroidea: Teleostei) and congruence with other molecular markers. Biological Journal of the Linnean Society, 78(1):273-292.
  47. Lavoué, S., Bertrand, J. A. M., Chen, W. J., Ho, H. C., Motomura, H., Sado, T., & Miya, M. (2017). Phylogenetic position of the rainbow sardine Dussumieria (Dussumieriidae) and its bearing on the early evolution of the Clupeoidei. Gene, 623(1):41-47.
  48. Lecomte, F., Grant, W. S., Dodson, J. J., Rodríguez-Sánchez, R., & Bowen, B. W. (2004). Living with uncertainty: Genetic imprints of climate shifts in East Pacific anchovy (Engraulis mordax) and sardine (Sardinops sagax). Molecular Ecology, 13(1):2169-2182.
  49. Lee, W. J., Conroy, J., Howell, W. H., & Kocher, T. D. (1995). Structure and evolution of teleost mitochondrial control regions. Journal of Molecular Evolution, 41(1):54-66.
  50. Lestari. (2017). Genetic diversity in Lemuru (Sardinella lemuru) based on diversity of the control region base (D-loop) in the Waters Probolinggo and Puger Waters. Undergraduate thesis. Malang: Department of Utilization of Fisheries and Marine Resources Universitas Brawijaya.
  51. Listiyaningsih, D. (2017). Genetic diversity of lemuru fish (Sardinella lemuru) in the fishing ground Probolinggo and Prigi Waters used the mtDNA control region sequence. Undergraduate Thesis. Malang: Department of Utilization of Fisheries and Marine Resources Universitas Brawijaya.
  52. Locarnini, R. A., Mishonov, A. V., Antonov, J. I., Boyer, T. P., Garcia, H. E., Baranova, O. K., Zweng, M. M., Paver, C. R., Reagan, J. R., Johnson, D. R., Hamilton, M., & Seidov, D. (2013). World ocean atlas 2013, Volume 1: Temperature. In S. Levitus, A. Mishonov, Technical (Eds.), NOAA Atlas NESDIS 73 (pp. 1-40). Maryland, USA: National Oceanographic Data Center.
  53. Luceño, A. J. M., Torres, M. A. J., Tabugo, S. R. M., & Demayo, C. G. (2014). Describing the body shapes of three populations of Sardinella lemuru (Bleeker, 1853) from Mindanao Island, Philippines using relative warp analysis. International Research Journal of Biological Sciences, 3(6):6-17.
  54. Lynch, M., & Crease, T. J. (1990). The analysis of population survey data on DNA sequence variation. Molecular Biology and Evolution, 7(4):377-394.
  55. Madduppa, H., Martaulina, R., Zairion, Z., Renjani, R. M., Kawaroe, M., Anggraini, N. P., Subhan, B., Verawati, I., & Sani, L. M. I. (2021). Genetic population subdivision of the blue swimming crab (Portunus pelagicus) across Indonesia inferred from mitochondrial DNA Implication to sustainable fishery. Plos One, 16(2):1-14.
  56. Mahrus, Sumitro, S. B., Widodo, N., & Sartimbul, A. (2012). The Association between genetic variations and Omega-3 production on Sardinella lemuru in Lombok Strait. IOSR Journal of Agriculture and Veterinary Science, 1(6):12-16.
  57. Mahrus, H., Al Idrus, A., & Zulkifli, L. (2022). Molecular phylogeny of anchovy (Clupeiformes: Clupeidae) from southern waters of Lombok using mitochondrial DNA CO1 gene sequences. Biodiversitas, 23(5):2433-2443.
  58. Mandal, S., Susanto, R. D., & Ramakrishnan, B. (2022). On investigating the dynamical factors modulating surface chlorophyll-a variability along the South Java Coast. Remote Sensing, 14(1745):1-19.
  59. Manjaji-Matsumoto, B. M., S., E., W., Z., M. A., S. H. & Madin, J., E. (2017). Marine profiling of Marudu Bay, Sabah: Final report. Malaysia: Borneo Marine Research Institute, Universiti Malaysia Sabah.
  60. Markert, J. A., Champlin, D. M., Gutjahr-Gobell, R., Grear, J. S., Kuhn, A., McGreevy, T. J., Roth, A., Bagley, M. J., & Nacci, D. E. (2010). Population genetic diversity and fitness in multiple environments. BMC Evolutionary Biology, 10(205):1-13.
  61. Merta, I. G. S., Widana, K., Yunizal, & Basuki, R. (2000, June). Status of the lemuru fishery in Bali Strait its development and prospects. In FAO/NGCP (Ed.), FISHCODE Management: Papers Presented at the Workshop on the Fishery and Management of Bali Sardinella (Sardinella lemuru) in Bali Strait (pp. 1-42). Rome, Italy: Food and Agriculture Organization of the United Nations (FAO).
  62. Nei, M. (1987). Molecular evolutionary genetics. New York Chichester, West Sussex: Columbia University Press.
  63. Nicholls, T. J., & Minczuk, M. (2014). In D-loop: 40 years of mitochondrial 7S DNA. Experimental Gerontology, 56(1):175-181.
  64. Noviasri, A. D., Setyohadi, D., & Iranawati, F. (2016). Population structure analysis Bali Sardinella (Sardinella lemuru) from East Java Waters using DNA sequencing technique. Undergraduate Thesis. Malang: Department of Utilization of Fisheries and Marine Resources, Universitas Brawijaya.
  65. Papasotiropoulos, V., Klossa-Kilia, E., Alahiotis, S. N., & Kilias, G. (2007). Molecular phylogeny of grey mullets (Teleostei: Mugilidae) in Greece: Evidence from sequence analysis of mtDNA segments. Biochemical Genetics, 45(1):623-636.
  66. Pata, P. R., & Yñiguez, A. T. (2019). Larval connectivity patterns of the North Indo-West Pacific coral reefs. Plos One, 14(7):1-25.
  67. Pata, P. R., Yñiguez, A. T., Deauna, J. D. L., De Guzman, A. B., Jimenez, C. R., Rosario, R. T. B. Del, & Villanoy, C. L. (2021). Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuru. Ecological Modelling, 451(13):1-11.
  68. Parker, P. G., Snow, A. A., Schug, M. D., Booton, G. C., & Fuerst, P. A. (1998). What molecules can tell us about populations: Choosing and using a molecular marker. Ecology. 79(2):361-382.
  69. Parrish, J. (1989). Fish communities of interacting shallow-water habitats in tropical oceanic regions. Marine Ecology Progress Series, 58(1):143-160.
  70. Pauly, D., Cabanban, A., & Torres, F. S. B. (1996). Fishery biology of 40 trawl-caught teleosts of western Indonesia. Iclarm Studies and Reviews, 23(1):135-216.
  71. Pedrosa-Gerasmio, I. R., Agmata, A. B., & Santos, M. D. (2015). Genetic diversity, population genetic structure, and demographic history of Auxis thazard (Perciformes), Selar crumenophthalmus (Perciformes), Rastrelliger kanagurta (Perciformes) and Sardinella lemuru (Clupeiformes) in Sulu-Celebes Sea inferred by mitochondrial DNA sequences. Fisheries Research, 162(1):64-74.
  72. Pertiwi, N. P. D., Sembiring, A., Mahardini, A., Cahyani, N. K. D., Anggoro, A. W., Nugraha, B., Sulistyaningsih, R. K., Jatmiko, I., & Mahardika, I. G. N. (2015, Januari). Population structure of bigeye tuna (Thunnus obesus) in the Indo-Malayan Archipelago: Control region analysis, mitochondrial DNA. Paper presented at National Symposium on Sustainable Tuna Fisheries Management, WWF-Indonesia.
  73. Pet, J. S., Van Densen, W. L. T., Machiels, M. A. M., Sukkel, M., Setyohadi, D., & Tumuljadi, A. (1997). Catch, effort and sampling strategies in the highly variable sardine fisheries around East Java, Indonesia. Fisheries Research, 31(1):121-137.
  74. Pranowo, W. S., Kuswardhani, A. R. T. D., Kepel, T. L., Kadarwati, U. R., Makarim, S., & Husrin, S. (2005a). Uncovering Indonesian through-flows, 1st ed. Jakarta: Indonesian Department of Maritime Affairs and Fisheries.
  75. Pranowo, W. S., Phillips, H., & Wijffels, S. (2005b). Upwelling event 2003 along South Java Sea & the Sea of Lesser Sunda Islands. Segara, 1(3):119-126.
  76. Pranowo, W. S., & Realino, B. S. (2006, November). Vertical current circulation in the Bali Strait during the 2004 southeast monsoon. Paper presented at Indonesian Public Water Forum III, KKP-Badan Riset Kelautan dan Perikanan, Palembang.
  77. Purba, N. P., Pranowo, W. S., Ndah, A. B., & Nanlohy, P. (2021). Seasonal variability of temperature, salinity, and surface currents at 0◦ latitude section of Indonesia seas. Regional Studies in Marine Science, 44(4):1-9.
  78. Putri, S. N. N., Maharani, G. R., Farhan, M., Lestari, D. F., Madduppa, H., Subhan, B., Arafat, D., Setyaningsih, W. A., Cakasana, N., Bintang, D. M. C., Indrajana, H. B., Priambada, A. D., Febridelita, A., & Yonatika, N. O. (2022). Population connectivity and genetic diversity population connectivity of rabbitfish (Siganus canaliculatus) among Bangladesh, China and Indonesia. IOP Conference Series: Earth and Environmental Science, 1033(1):1-12.
  79. Qu, T., Song, Y. T., & Yamagata, T. (2009). An introduction to the South China Sea throughflow: Its dynamics, variability, and application for climate. Dynamics of Atmospheres and Oceans, 47(1):3-14.
  80. Rahimi, P., Gilkolaie, S. R., Mostafavi, P. G., Jamili, S., & Rahnema, M. (2016). Population genetic structure of the white sardine, Sardinella albella, in the Persian Gulf and Sea of Oman by analysis of mitochondrial control region. Iranian Journal of Fisheries Sciences, 15(3):995-1008.
  81. Rajan, P. T., Sreeraj, C. R., & Immanuel, T. (2013). Fishes of Andaman and Nicobar Islands: A checklist. Journal of the Andaman Science Association, 18(1):47-87.
  82. Rini, I. P. S., Azis, N. B., & Bambang A. W. (2017). Development strategy of Kedonganan fish landing place (PPI) Badung Regency Bali. Journal of Fisheries Resources Utilization Management and Technology, 6(4):119-128.
  83. Rintaka, W. E., & Priyono, B. (2020). Variation of seawater temperature and chlorophyll-a prior to and during upwelling event in Bali Strait, Indonesia: From observation and model. IOP Conference Series: Earth and Environmental Science, 429(1):1-14.
  84. Rola, A. C., Narvaez, T. A., Naguit, M. R. A., Elazegui, D. D., Brillo, B. B. C., Paunlagui, M. M., Jalotjot, H. C., & Cervantes, C. P. (2018). Impact of the closed fishing season policy for sardines in Zamboanga Peninsula, Philippines. Marine Policy, 87(1):40-50.
  85. Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X., & Rozas, R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19(18):2496-2497.
  86. Saeidi, Z., Rezvani Gilkolaei, S., Soltani, M., & Laloei, F. (2014). Population genetic studies of Liza aurata using D-loop sequencing in the southeast and southwest coasts of the Caspian Sea. Iranian Journal of Fisheries Sciences, 13(1):216-227.
  87. Saitou, N., & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular biology and evolution, 4(4):406-425.
  88. Sakai, A. K., Allendorf, F. W., Holt, J. S., Lodge, D. M., Molofsky, J., With, K. A., Baughman, S., Cabin, R. J., Cohen, J. E., Ellstrand, N. C., McCauley, D. E., O’Neil, P., Parker, I. M., Thompson, J. N., & Weller, S. G. (2001). The population biology of invasive species. Annual Review of Ecology and Systematics, 32(1):305-332.
  89. Saleh, M. F., Arshaad, W. M., Hassan, R. B. R., Jamaludin, A. N., & Fatah, A. N. N. (2017). Managing purse seine fisheries in the Southeast Asian Region: A joint effort among ASEAN Member States. Fish for the people, 15(3):14-16.
  90. Sambah, A. B., Wijaya, A., Hidayati, N., & Iranawati, F. (2021a). Sensitivity and dynamic of Sardinella lemuru in Bali Strait Indonesia. Journal of Hunan University (Natural Sciences), 48(1):97-109.
  91. Sambah, A. B., Wijaya, A., Iranawati, F., & Hidayati, N. (2021b). Impact of ENSO and IOD on chlorophyll-a concentration and sea surface temperature in the Bali Strait. IOP Conference Series: Earth and Environmental Science, 674(1):1-15.
  92. Samsi, A. N., Omar, S. B. A., Niartiningsih, A., & Soekendarsi, E. (2019). Morphometric variations of Terebralia palustris Linnaeus 1967 in mangrove ecosystems. International Journal of Scientific and Technology Research, 8(10):3787-3789.
  93. Sanger, F., Nicklen, S., & Coulson, A. (1977). DNA sequencing with chain-terminating. Proceedings of the National Academy of Sciences Proceedings of the National Academy of Sciences, 74(12):5463-5467.
  94. Sartimbul, A., Nakata, H., Rohadi, E., Yusuf, B., & Kadarisman, H. P. (2010). Variations in chlorophyll-a concentration and the impact on Sardinella lemuru catches in Bali Strait, Indonesia. Progress in Oceanography, 87(1-4):168-174.
  95. Sartimbul, A., Rohadi, E., Ikhsani, S. N., & Listiyaningsih, D. (2018a). Morphometric and meristic variations among five populations of Sardinella lemuru Bleeker, 1853 from waters of Bali Strait, northern and southern-East Java and their relation to the environment. AACL Bioflux, 11(3):744-752.
  96. Sartimbul, A., Rohadi, E., Yona, D., Yuli, H. E., Sambah, A. B., & Arleston, J. (2018b). Change in species composition and its implication on climate variation in Bali Strait: Case study in 2006 and 2010. Journal of Survey in Fisheries Sciences, 4(2):38-46.
  97. Sartimbul, A., Winata, V. A., Kasitowati, R. D., Iranawati, F., Rohadi, E., Yona, D., Anjeli, U. G., Pranowo, W. S., & Lauro, F. M. (2023a). Seasonal Indonesian throughflow (ITF) across Southern Java determines genetic connectivity of Sardinella lemuru (Bleeker, 1835). Deep-Sea Research Part II: Topical Studies in Oceanography, 209(3):1-12.
  98. Sartimbul, A., Nakata, H., Herawati, E. Y., Rohadi, E., Yona, D., Harlyan, L. I., Putri, A. D. R., Winata, V. A., R. I., Khasanah, Arifin, Z., Susanto, R. D., & Lauro, F. M. (2023b). Monsoonal variation and its impact on the feeding habit of Bali Sardinella (S. lemuru Bleeker, 1853) in Bali Strait. Deep-Sea Research Part II: Topical Studies in Oceanography, 211(5):1-10.
  99. Schlitzer, R. (2020). Ocean Data View v5.3.0 (Version 5.3.0). Germany: Alfred Wegener Institute for Polar and Marine Research Bremerhaven.
  100. Scribner, K. T., Lowe, W. H., Landguth, E., Luikart, G., Infante, D. M., Whelan, G. E., & Muhlfeld, C. C. (2016). Applications of genetic data to improve management and conservation of river fishes and their habitats. Fisheries, 41(4):174-188.
  101. Setyohadi, D. (2009). Study of potential and stock dynamic of oil sardine (Sardinella lemuru) in Bali Straits and its alternative fisheries management. Jurnal Perikanan (Journal of Fisheries Sciences), 11(1):78-86.
  102. Setyohadi, D., Zakiyah, U., Sambah, A. B., & Wijaya, A. (2021). Upwelling Impact on Sardinella lemuru during the Indian Ocean Dipole in the Bali Strait, Indonesia. Fishes, 6(8):1-9.
  103. Siswanto, E., Horii, T., Iskandar, I., Gaol, J. L., Setiawan, R. Y., & Susanto, R. D. (2020). Impacts of climate changes on the phytoplankton biomass of the Indonesian maritime continent. Journal of Marine Systems, 212(12):1-15.
  104. Skogen, M. D. (2005). Clupeoid larval growth and plankton production in the Benguela upwelling system. Fisheries Oceanography, 14(1):64-70.
  105. Smith, M. H., & Chesser, R. K. (1981). Rationale for conserving genetic variation of fish gen pool. Ecology Bulletin Journal, 34(1):13-20.
  106. Sprintall, J., Wijffels, S. E., Molcard, R., & Jaya, I. (2009). Direct estimates of the Indonesian throughflow entering the Indian Ocean: 2004-2006. Journal of Geophysical Research, 114(C7):1-19.
  107. Sprintall, J., Gordon, A. L., Flament, P., & Villanoy, C. L. (2012). Observations of exchange between the South China Sea and the Sulu Sea. Journal of Geophysical Research, 117(C5):1-18.
  108. Sukumaran, S., Sebastian, W., & Gopalakrishnan, A. (2016). Population genetic structure of Indian oil sardine, Sardinella longiceps along Indian Coast. Gene, 576(1):372-378.
  109. Suniada, K. I., & Susilo, E. (2017). Relationship of oceanography conditions and pelagic fisheries in Bali Strait Waters. Jurnal Penelitian Perikanan Indonesia, 23(4):275-286.
  110. Susanto, R. D., Gordon, A. L., & Zheng, Q. (2001). Upwelling along the coasts of Java and Sumatra and its relation to ENSO. Geophysical Research Letters, 28(8):1599-1602.
  111. Susanto, R. D., & Marra, J. (2005). Effect of the 1997/98 El Niño on chlorophyll a variability along the southern coasts of Java and Sumatra. Oceanography, 18(4):124-127.
  112. Susanto, R. D., Moore, T. S., & Marra, J. (2006). Ocean color variability in the Indonesian Seas during the SeaWiFS era. Geochemistry, Geophysics, Geosystems, 7(5):1–16.
  113. Susanto, R. D., Fang, G., Soesilo, I., Zheng, Q., Qiao, F., Wei, Z., & Sulistyo, B. (2010). New surveys of a branch of the Indonesian throughflow. Eos, 91(30):261-263.
  114. Susanto, R. D., Ffield, A., Gordon, A. L., & Adi, T. R. (2012). Variability of Indonesian throughflow within Makassar Strait, 2004-2009. Journal of Geophysical Research, 117(C9):1-16.
  115. Susanto, R. D., Wei, Z., Adi, R. T., Fan, B., Li, S., & Fang, G. (2013). Observations of the Karimata Strait throughflow from December 2007 to November 2008. Acta Oceanologica Sinica, 32(5):1-6.
  116. Susanto, R. D., Wei, Z., Adi, T. R., Zheng, Q., Fang, G., Fan, B., Supangat, A., Agustiadi, T., Li, S., Trenggono, M., & Setiawan, A. (2016). Oceanography surrounding Krakatau Volcano in the Sunda Strait, Indonesia. Oceanography, 29(2):264-272.
  117. Susanto, R. D., Waworuntu, J. M., Prayoga, W., & Setianto, A. (2021). Moored observations of current and temperature in the Alas Strait, Indonesia: Collected for submarine tailing placement used for calculating the Indonesian throughflow. Oceanography, 34(1):240-248.
  118. Syahidah, D. (2017). Analysis of the population structure of tembang fish (Sardinella fimbriata) from the Southern Waters of East Java and the Madura Strait using DNA sequencing techniques. Undergraduate thesis. Malang: Department of Utilization of Fisheries and Marine Resources Universitas Brawijaya, Malang.
  119. Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38(7):3022-3027.
  120. Theoyana, T. A., Pranowo, W. S., Kuswardani, A. R. T. D., & Puwarto. (2015). Characteristics of tidal currents in the Badung Strait, Bali. Jurnal Segara, 11(2):115-123.
  121. Thomas, J. R. C., Willette, D. A., Carpenter, K. E., & Santos, M. D. (2014). Hidden diversity in sardines: Genetic and morphological evidence for cryptic species in the Goldstripe Sardinella, Sardinella gibbosa (Bleeker, 1849). Plos One, 9(1):1-10.
  122. Wahidah, M. A., Noorul-Azliana, J., Masazurah, A. R., Annie-Nunis, B., Adam-Luke, P., NikZuraini, O., Achmad-Zamroni, Muhammad-Taufik, Noor-Adelyna, M. A., Danial-Hariz, Z. A., & Mohd-Nor, S.. (2019). Genetic study of Amblygaster sirm inferred by mitochondrial DNA (mtDNA) in the South China Sea and the Andaman Sea. In: Mohammad-Faisal, M. S., Wahidah, M. A., Raja Bidin R.H., Katoh, M., Abdul-Razak, L., Nurul-Nadwa, A. F. & Khairiah, J. 2019. Project Terminal Report: Comparative Studies for the Management of Purse Seine Fisheries in the Southeast Asian Region. Kuala Lumpur, Malaysia. SEAFDEC/MFRDMD/SP/45. p147-177.
  123. Wainwright, B. J., Leon, J., Vilela, E., Hickman, K. J. E., Caldwell, J., Aimone, B., Bischoff, P., Ohran, M., Morelli, M. W., Arlyza, I. S., Marwayana, O. N., & Zahn, G. (2024). Wallace’s line structures seagrass microbiota and is a potential barrier to the dispersal of marine bacteria. Environmental Microbiome, 19(23):1-11.
  124. Walsh, P. S., Metzger, D. A., & Higuchi, R. (2013). Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material, BioTechniques, 54(3):134-139.
  125. Wang, M., Zhang, X., Yang, T., Han, Z., Yanagimoto, T., & Gao, T. (2008). Genetic diversity in the mtDNA control region and population structure in the Sardinella zunasi Bleeker. African Journal of Biotechnology, 7(24):4384-4392.
  126. Wang, Y., Xu, T., Li, S., Susanto, R. D., Agustiadi, T., Trenggono, M., Tan, W., & Wei, Z. (2019). Seasonal variation of water transport through the Karimata Strait. Acta Oceanologica Sinica, 38:47-57.
  127. Wei, Z., Fang, G., Susanto, R. D., Adi, T. R., Fan, B., Setiawan, A., Li, S., Wang, Y., & Gao, X. (2015). Tidal elevation, current, and energy flux in the area between the South China Sea and Java Sea. Ocean Science, 12(1):2831-2861.
  128. Wei, Z., Li, S., Susanto, R. D., Wang, Y., Fan, B., Xu, T., Sulistiyo, B., Adi, T. R., Setiawan, A., Kuswardani, A., & Fang, G. (2019). An overview of 10-year observation of the South China Sea branch of the Pacific to Indian Ocean throughflow at the Karimata Strait. Acta Oceanologica Sinica, 38(4):1-11.
  129. Whitehead, P. J. P. (1985). FAO species catalogue: Clupeid fishes of the world. An annotated and illustrated catalogue of the herrings, sardines, pilchards, sprats, anchovies, and wolf herrings. Part 1. Chirocentridae, Clupeidae and Pristigasteridae. Rome: FAO.
  130. Wijana, I. M. S., & Mahardika, I. G. N. (2010). Genetic structure and phylogeny of yellowfin tuna (Thunnus albacares) based on mitochondrial DNA sequence cytochrome oxidase I in biogeographic zone diversity. Bumi Lestari (Journal of Environment), 10(2):270-274.
  131. Wijaya, A., Zakiyah, U., Sambah, A. B., & Setyohadi, D. (2020). Spatio-temporal variability of temperature and chlorophyll-a concentration of sea surface in Bali strait, Indonesia. Biodiversitas, 21(11):5283-5290.
  132. Willette, D. A., Bognot, E., Mutia, M., & Santos, M. (2011). Biology and ecology of Sardines in the Philippine: A review. BFAR-NFRDI Technical Paper Series, 13(1):1-22.
  133. Willette, D. A., & Santos, M. D. (2013). Correcting widespread misidentifications of the highly abundant and commercially important sardine species Sardinella lemuru, Bleeker, 1853 in the Philippines. Applied Ichthyology, 29(1):881-885.
  134. Winata, V. A., Kasitowati, R. D., Iranawati, F., Pranowo, W. S., & Sartimbul, A. (2022). Molecular and phylogenetic analysis of Sardinella lemuru Bleeker 1835 at fishing ground Canggu-Bali inferred D-loop mutations of mtDNA. IOP Conference Series: Earth and Environmental Science, 1036(012065):.
  135. Wirasatriya, A., Setiawan, J. D., Sugianto, D. N., Rosyadi, I. A., Haryadi, H., Winarso, G., Setiawan, R. Y., & Susanto, R. D. (2020). Ekman dynamics variability along the southern coast of Java revealed by satellite data. International Journal of Remote Sensing, 41(21):8475-8496.
  136. Wujdi, A., Suwarso, & Wudianto. (2012). Length-weight relationship, condition factors and size structure of Bali Sardinella (Sardinella lemuru Bleeker, 1853) in Bali Strait Waters. Bawal, 4(2):83-89.
  137. Wujdi, A., Suwarso, & Wudianto. (2013). Biology reproduction and spawning season of Bali Sardinella (Sardinella lemuru Bleeker 1853) in Bali Strait Waters. BAWAL: Widya Riset Perikanan Tangkap, 5(1):49-57.
  138. Wujdi, A., & Wudianto. (2015). Stock status of Bali Sardinella (Sardinella lemuru Bleeker, 1853) in The Bali Straits Waters. Jurnal Penelitian Perikanan Indonesia, 21(4):253-260.
  139. Xu, T. F., Wei, Z. X., Susanto, R. D., Li, S. J., Wang, Y. G., Wang, Y., Xu, X. Q., Agustiadi, T., Trenggono, M., Sulistyo, B., Setiawan, A., Kuswardani, A., & Fang, G. H. (2021). Observed water exchange between the South China Sea and Java Sea through Karimata Strait. Journal of Geophysical Research, 126(1):1-25.
  140. Zweng, M. M., Reagan, J. R., Antonov, J. I., Mishonov, A. V., Boyer, T. P., Garcia, H. E., Baranova, O. K., Johnson, D. R., Seidov, D., & Biddle, M. M. (2013). In S. Levitus, A. Mishonov Technical (Eds.), World Ocean Atlas 2013, Volume 2: Salinity. NOAA Atlas NESDIS 74 (pp. 1-39). Maryland, USA: National Oceanographic Data Center.
Read More

Author Biographies

Aida Sartimbul, Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia

Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia.

I Gusti Ayu Diah Hendiari, Faculty of Fisheries and Marine Science, Udayana University, Indonesia

Faculty of Fisheries and Marine Science, Udayana University, Indonesia.

I Wayan Arthana, Faculty of Fisheries and Marine Science, Udayana University, Indonesia

Faculty of Fisheries and Marine Science, Udayana University, Indonesia.

Gde Raka Angga Kartika, Faculty of Fisheries and Marine Science, Udayana University, Indonesia

Faculty of Fisheries and Marine Science, Udayana University, Indonesia.

Victor Adi Winata, Master's Degree Program, Faculty of Fisheries and Marine Science, Universitas Brawijaya

Master's Degree Program, Faculty of Fisheries and Marine Science, Universitas Brawijaya.

Widodo Setiyo Pranowo, Department of Hydrography, Indonesian Naval Postgraduate School (STTAL), East Ancol, Jakarta

Research Center for Climate and Atmosphere, National Research and Innovation Agency (BRIN), East Ancol, Jakarta, 14430. Indonesia.

Department of Hydrography, Indonesian Naval Postgraduate School (STTAL), East Ancol,
Jakarta.

 

Raden Dwi Susanto, Department of Atmospheric and Oceanic Science, University of Maryland, College Park, USA

Department of Atmospheric and Oceanic Science, University of Maryland, College Park, USA.

Erfan Rohadi, Department of Information Technology, State Polytechnic of Malang, Indonesia

Department of Information Technology, State Polytechnic of Malang, Indonesia.

Nurul Muslihah, Department of Nutrition Science, Faculty of Medicine, Universitas Brawijaya, Indonesia

Department of Nutrition Science, Faculty of Medicine, Universitas Brawijaya, Indonesia.

Defri Yona, Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia

Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia.

Feni Iranawati, Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia

Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia.

Download this PDF file
Altmetric Badge
Trend MD
Statistic
Read Counter : 10

Downloads

Download data is not yet available.

Most read articles by the same author(s)