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Marine Science Fisheries Biotechnology Molecular Genetics Oceanography DNA Barcoding

The Genetic Diversity of Bali Sardinella (Sardinella lemuru) Caught at Bali Strait and Its Possible Relation to The Ocean Circulation

https://doi.org/10.20473/jipk.vi.56670
Aida Sartimbul
Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0002-4648-4990
I Gusti Ayu Diah Hendiari
Faculty of Fisheries and Marine Science, Udayana University, Indonesia
https://orcid.org/0000-0003-1663-6823
I Wayan Arthana
Faculty of Fisheries and Marine Science, Udayana University, Indonesia
https://orcid.org/0000-0003-2298-2255
Gde Raka Angga Kartika
Faculty of Fisheries and Marine Science, Udayana University, Indonesia
https://orcid.org/0000-0002-1825-5621
Victor Adi Winata
Master's Degree Program, Faculty of Fisheries and Marine Science, Universitas Brawijaya
https://orcid.org/0000-0001-5261-6382
Widodo Setiyo Pranowo
Department of Hydrography, Indonesian Naval Postgraduate School (STTAL), East Ancol, Jakarta
https://orcid.org/0000-0002-5798-4181
Raden Dwi Susanto
Department of Atmospheric and Oceanic Science, University of Maryland, College Park, USA
https://orcid.org/0000-0003-1495-5951
Erfan Rohadi
Department of Information Technology, State Polytechnic of Malang, Indonesia
https://orcid.org/0000-0001-6459-8337
Nurul Muslihah
Department of Nutrition Science, Faculty of Medicine, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0003-4747-7239
Defri Yona
Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0003-4266-9071
Feni Iranawati
Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia
https://orcid.org/0000-0002-6307-3368

Corresponding Author(s) : Aida Sartimbul

aida@ub.ac.id

Jurnal Ilmiah Perikanan dan Kelautan, 2024: IN PRESS ISSUE (JUST ACCEPTED MANUSCRIPT, 2024)

Abstract

Graphical Abstract



Highlight Research



  • A low sequence divergence of lemuru between Bali Strait and the northern latitude.

  • S. lemuru migration route through ITF will maintain its nucleotide variation.

  • The high haplotype diversity of lemuru is a testament to its adaptability.

  • S. lemuru's high haplotype diversity supports their stock recovery in the Bali Strait.

  • Two sardine species are morphologically and genetically highly distinct, even though they prefer overlapping water mass conditions from each other.


Abstract


Sardinella lemuru is known as the native pelagic fish of the Bali Strait. However, its presence has become difficult to find recently. This study aimed to validate S. lemuru using molecular taxonomy and link it to water circulations for sustainable management. It is the first study of relatively complete sequence data on S. lemuru in the Bali Strait. A total of 47 sequences were amplified using the control region gene of mitochondrial DNA. Other S. lemuru (n = 4) and Amblygaster sirm (n = 12) sequences were retrieved from GenBank. Low sequence divergence is observed in clade-1 of S. lemuru across the Bali Strait, Manado-Sulawesi, and Kudat-Malaysia. This is probably due to its migration using the main Indonesian ThroughFlow (ITF). There is evolutionary divergence between two groups of S. lemurs, measuring 35.3%±4.1. The first signs of these cryptic groups were found at Canggu and Prigi, with 87 base-pair differences between the two groups. This study also presents strong evidence that A. sirm prefers overlapping water mass conditions with S. lemuru in the Bali Strait but is morphologically and genetically distinct. Notably, three samples of A. sirm in Kedonganan-Bali are clustered with other A. sirm locations passed by the primary and secondary South China Sea throughflow. The high genetic diversity of S. lemuru among Bali Strait sites demonstrates its adaptive ability, with scattered single-frequency haplotypes. The adaptive ability traits of S. lemuru support its stock recovery. The stock recovery recommendation is based on finding S. lemuru's adaptive traits within their populations in suitable habitats and climatic conditions.

Keywords

Genetic Distance, Haplotype Connectivity, Phylogenetics, Sardine fisheries, Sequence Divergence, Water Circulation
Sartimbul, A., Hendiari, I. G. A. D. ., Arthana, . I. W. ., Kartika, G. R. A. ., Winata, V. A. ., Pranowo, W. S. ., Susanto, R. D. ., Rohadi, E. ., Muslihah, N. ., Yona, D. ., & Iranawati, F. . (2024). The Genetic Diversity of Bali Sardinella (Sardinella lemuru) Caught at Bali Strait and Its Possible Relation to The Ocean Circulation . Jurnal Ilmiah Perikanan Dan Kelautan. https://doi.org/10.20473/jipk.vi.56670
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Author Biographies

Aida Sartimbul, Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia

Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia.

I Gusti Ayu Diah Hendiari, Faculty of Fisheries and Marine Science, Udayana University, Indonesia

Faculty of Fisheries and Marine Science, Udayana University, Indonesia.

I Wayan Arthana, Faculty of Fisheries and Marine Science, Udayana University, Indonesia

Faculty of Fisheries and Marine Science, Udayana University, Indonesia.

Gde Raka Angga Kartika, Faculty of Fisheries and Marine Science, Udayana University, Indonesia

Faculty of Fisheries and Marine Science, Udayana University, Indonesia.

Victor Adi Winata, Master's Degree Program, Faculty of Fisheries and Marine Science, Universitas Brawijaya

Master's Degree Program, Faculty of Fisheries and Marine Science, Universitas Brawijaya.

Widodo Setiyo Pranowo, Department of Hydrography, Indonesian Naval Postgraduate School (STTAL), East Ancol, Jakarta

Research Center for Climate and Atmosphere, National Research and Innovation Agency (BRIN), East Ancol, Jakarta, 14430. Indonesia.

Department of Hydrography, Indonesian Naval Postgraduate School (STTAL), East Ancol,
Jakarta.

 

Raden Dwi Susanto, Department of Atmospheric and Oceanic Science, University of Maryland, College Park, USA

Department of Atmospheric and Oceanic Science, University of Maryland, College Park, USA.

Erfan Rohadi, Department of Information Technology, State Polytechnic of Malang, Indonesia

Department of Information Technology, State Polytechnic of Malang, Indonesia.

Nurul Muslihah, Department of Nutrition Science, Faculty of Medicine, Universitas Brawijaya, Indonesia

Department of Nutrition Science, Faculty of Medicine, Universitas Brawijaya, Indonesia.

Defri Yona, Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia

Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia.

Feni Iranawati, Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia

Faculty of Fisheries and Marine Science, Universitas Brawijaya, Indonesia.

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